PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g04010
Common NameGSCOC_T00013726001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 94aa    MW: 11064.1 Da    PI: 9.6351
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g04010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.57.3e-0633581943
                 HHH.SSS--HHHHHHHHHHCTS-HHH CS
     Homeobox 19 Fek.nrypsaeereeLAkklgLterq 43
                 F k +++p++++r++L+++lgL+ rq
  Cc00_g04010 33 FLKeCPHPDENQRRQLSSELGLEPRQ 58
                 5555*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-53458IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MKLSKVLVYI LHARSFLNLC VFTLFYLFYF FMFLKECPHP DENQRRQLSS ELGLEPRQSS  60
SGFKIKEPKQ RVTMNELTTM PLELKITDSI MRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068VC682e-61A0A068VC68_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.19e-09homeodomain GLABROUS 11