PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g06080

Common Name

GSCOC_T00010709001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 195aa MW: 22717.4 Da PI: 10.9319

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g06080	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	92	115	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H r H Cc00_g06080 92 YICSVCGRKCKTHLDLKKHFRQlH 115 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.72E-5	85	120	No hit	No description
PROSITE profile	PS50157	11.094	92	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0067	92	115	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	94	115	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MVRTKEGIYT AKPKKVVILW DLDNKPPRGP PYQAAMALKK VAQHFGNLVD ISAYANRHAF 60 IHLPQWVVEE RRERRRMDIL ERKGVSTPSE PYICSVCGRK CKTHLDLKKH FRQLHERERQ 120 KKLNRMRSLK GKKRQRFKER FIDGNEKYNE AARTLTSPKV GYGLASELRR AGVFVKTVED 180 KPQENFTNIP KPHS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077019.1	1e-144	uncharacterized protein LOC113700772, partial
Refseq	XP_027178002.1	1e-144	uncharacterized protein LOC113777161, partial
TrEMBL	A0A068VE16	1e-143	A0A068VE16_COFCA; Uncharacterized protein
STRING	XP_008452587.1	1e-114	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-103	C2H2-like zinc finger protein