PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g07200
Common NameGSCOC_T00006852001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 237aa    MW: 26733.2 Da    PI: 5.4591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g07200genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-114993554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 + e Er+RR+++ ++++  r ++P+ +      K++Ka+i + A++YI++L
  Cc00_g07200 49 NIESERKRRKKLTERLHAVRAVVPNiS------KMDKASIIKDAIDYIQEL 93
                 5689*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-1644110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.6634493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-104798No hitNo description
PfamPF000102.5E-84993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1450111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MADIDVAYKY YWENMFLQTE QLASYFDESF SFHDSNSPDG AQSSAASKNI ESERKRRKKL  60
TERLHAVRAV VPNISKMDKA SIIKDAIDYI QELHNQERVI QAEISELESK RSIFLDFDEE  120
RSCNSKSKRS RFEQTCDSVG SRSSPIEVLE LRVSHIGQKT IVVSLACSKR TDTIVKICEV  180
FESLNLKIIT ANITAFSGRL LNTVFLEANE EEKDVLKIKI QTAIAALNDP DSPTSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1449113971Transcription factor MYC2
5gnj_B4e-1449113971Transcription factor MYC2
5gnj_E4e-1449113971Transcription factor MYC2
5gnj_F4e-1449113971Transcription factor MYC2
5gnj_G4e-1449113971Transcription factor MYC2
5gnj_I4e-1449113971Transcription factor MYC2
5gnj_M4e-1449113971Transcription factor MYC2
5gnj_N4e-1449113971Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069104.11e-166transcription factor bHLH35-like isoform X2
SwissprotQ2HIV93e-77BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A068VEJ61e-172A0A068VEJ6_COFCA; Uncharacterized protein
STRINGXP_008223870.11e-110(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-74bHLH family protein