PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g07300
Common NameGSCOC_T00009770001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 287aa    MW: 31621 Da    PI: 7.1084
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g07300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32168224158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RR++Rak+e ekkl +k+rkpylheSRh+hAlrR+RgsgGrF
  Cc00_g07300 168 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKARKPYLHESRHQHALRRARGSGGRF 224
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.7E-36166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.919167227IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.6E-28169224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-24170192IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860172192IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-24201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MQPKPKRSDR IDVNLYDVPH STVCSDPWWS TMGYNSISTT MMRGSVSESS SLEQSMDGQS  60
QSDSRINEED EDSAKQSQSV VNQHPDGNYA QEDNNFQRIA SAIPPKSNES LTQPQQFELV  120
GHSIACASNP YADPYFAGMV ATYGQPLVHP PLIDMHHARM PLPLEMTQEP VYVNAKQYHG  180
ILRRRESRAK AELEKKLIKA RKPYLHESRH QHALRRARGS GGRFAKKTDA NDSMGSCSSS  240
AISSHGSFER PNSSQEVTQD SVNGAGGYLP GQLCGNVPSK QVDSMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-19168224258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065267.10.0nuclear transcription factor Y subunit A-1-like
RefseqXP_027150160.10.0nuclear transcription factor Y subunit A-1-like
TrEMBLA0A068VE790.0A0A068VE79_COFCA; Uncharacterized protein
STRINGXP_009624416.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-45nuclear factor Y, subunit A1