PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g07530
Common NameGSCOC_T00005547001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 262aa    MW: 28796.4 Da    PI: 4.9357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g07530genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17115162253
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                  ++kGVr+++  g+WvAeIrdp     +  ++++lg+f +aeeAa+a+++   ++
  Cc00_g07530 115 HFKGVRQRS-AGKWVAEIRDP-----HqgRSVWLGTFTSAEEAARAYDRKCIQF 162
                  69****999.8*********7.....336*******************876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.9E-11115163IPR001471AP2/ERF domain
CDDcd000188.64E-27115174No hitNo description
PROSITE profilePS5103220.323115172IPR001471AP2/ERF domain
SMARTSM003802.4E-32115178IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20115173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-28115173IPR001471AP2/ERF domain
PRINTSPR003675.9E-7116127IPR001471AP2/ERF domain
PRINTSPR003675.9E-7138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MYRFSDQTSE ELFRDEVDKC IVSALQHVIS NTEAAAPPTA PAHQQQPTVM PEFEGVTSLS  60
QSSATASSGL GSSSTGTMME DNDDQSRNDE KQKQKNKKKK KKKREVERDG EKRVHFKGVR  120
QRSAGKWVAE IRDPHQGRSV WLGTFTSAEE AARAYDRKCI QFRGDRAKTN FPSSDYANAN  180
DDQPSGSQQQ QQQQDAPPPA AALLSVNAPV EYTSAVTTNS TTTAADAGGT SWEEDEGFWD  240
VFQILSDTDW RMMDSPPPSG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-16115172260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103KKKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027127802.11e-151ethylene-responsive transcription factor 4-like
RefseqXP_027171674.11e-151ethylene-responsive transcription factor 4-like
TrEMBLA0A068VHB20.0A0A068VHB2_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-21related to AP2 6l