PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g07580
Common NameGSCOC_T00008191001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 275aa    MW: 31568.6 Da    PI: 8.4628
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g07580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.43.5e-2016106199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkv    d l s++l +p +f+++++g+   ++t tle ++grsW++     k ++ +++++GW++Fv++n L+  Df++F++ g s+f  +v +f 
  Cc00_g07580  16 FFKVY--TDQLCSSQLKIPPEFVKKFNGDV--PQTFTLEGPQGRSWQIVA--GKVDEYFYFQEGWQNFVEDNSLENDDFLTFSYGGCSRF--YVEIFG 105
                  77888..8999999************8775..458***************..999999*************************9775666..999987 PP

                  S CS
           B3  99 k 99 
                  k
  Cc00_g07580 106 K 106
                  5 PP
2B339.69.3e-131852591390
                  TT-EE--HHH...HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3  13 sgrlvlpkkf..aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                  ++ + +p++f  +++h     ++ +  l   + r+W+v +   k+++ + l +GW++Fvk+n Lk gD + F+++++ +++
  Cc00_g07580 185 NRYVKFPRDFgnVKKH----WKNGKGALLRVQAREWKVSI--AKSGRYFHLCTGWSSFVKENSLKIGDECNFEVIDNnDDG 259
                  3346778888223333....3333567778899*******..99999999999********************99874444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-269109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-2410109IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-1914104No hitNo description
PROSITE profilePS5086313.97214107IPR003340B3 DNA binding domain
SMARTSM010191.0E-1516107IPR003340B3 DNA binding domain
PfamPF023621.4E-1716105IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039173268IPR003340B3 DNA binding domain
SMARTSM010190.0013175270IPR003340B3 DNA binding domain
CDDcd100171.34E-7175256No hitNo description
Gene3DG3DSA:2.40.330.102.7E-13175266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-14175256IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-11184259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKQNSKVLYS DESPMFFKVY TDQLCSSQLK IPPEFVKKFN GDVPQTFTLE GPQGRSWQIV  60
AGKVDEYFYF QEGWQNFVED NSLENDDFLT FSYGGCSRFY VEIFGKHGCI KEGAFTIWND  120
AMHRNESTLE QLHGKLNNTT QPMGRSLRSR TRGSCSEIGL AGKVQDNMRH HSGPFRVQLT  180
KTYTNRYVKF PRDFGNVKKH WKNGKGALLR VQAREWKVSI AKSGRYFHLC TGWSSFVKEN  240
SLKIGDECNF EVIDNNDDGI VLEVTMSRCP DKIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066405.10.0B3 domain-containing protein REM21-like
RefseqXP_027125313.10.0B3 domain-containing protein REM21-like
RefseqXP_027169516.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A068VE430.0A0A068VE43_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.15e-18B3 family protein