PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g07590
Common NameGSCOC_T00008192001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 478aa    MW: 55245.1 Da    PI: 5.305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g07590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039448466220
                  EETTTTEEESSHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                  +C++Cg+ F ++  L+rH+
  Cc00_g07590 448 RCEKCGEEFESRNKLHRHL 466
                  7*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-13163212No hitNo description
SMARTSM004511.7E-4167201IPR003604Zinc finger, U1-type
PfamPF121714.3E-10170195IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003556170194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785447476IPR007087Zinc finger, C2H2
SMARTSM003551.3447471IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280449471IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MFRTCFRISP IPLGLGFPKE APLLVGHMFD SVTAFYNYWL GFVTLMDFCW VDQYDVMAGP  60
NRKSRRVMEE ENKKLRKKAR REYNDTVRGL AEFVKKRDKR VIDMQMKRSE EVERRKEEER  120
ERKKELERQK AERAKKYEEP EWAKVEDIED EDTEEIVDDD KKKKGDGKEL YCVACGKKFK  180
SDKQWKNHEQ SKKHKEKVAE LRNTFIEEDE EYEEGKTEEV GEEYDEEDEV GAEESGFLSA  240
DDEVDELMDH FNSTMEIREE GNDEAQSSEQ DGLVDRDSGI GLKELQSDMR SDDDEASNLE  300
AMVSGQKNRK NGSLDQKPKR ASNKIPVKVD SNEMDFMAYN NMKGSRRNRG GRKQRGRTLE  360
EAAQTEIAEA HVEAENNGYH DTMKEASSDS FLETQSRGKE DDESETSHKL SRQAVNKKGT  420
AKSDSNFKSK EAPKGRKKKA NTKVISNRCE KCGEEFESRN KLHRHLGDTG HATLKSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280KKLRKKARR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065885.10.0DNAJ protein JJJ1 homolog
TrEMBLA0A068VEE50.0A0A068VEE5_COFCA; Uncharacterized protein
STRINGXP_009595027.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-77DNAJ heat shock N-terminal domain-containing protein