PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g07980
Common NameGSCOC_T00009232001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-X1
Protein Properties Length: 1123aa    MW: 121570 Da    PI: 8.1681
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g07980genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.36.5e-08309326118
     zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                  CG+H+C+++CH GpC+pC
  Cc00_g07980 309 CGRHRCERTCHVGPCDPC 326
                  ****************** PP
2zf-NF-X116.81.5e-05637652116
     zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                  CG H C ++CH+ pC+
  Cc00_g07980 637 CGLHACARTCHPSPCD 652
                  ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.77E-7130202No hitNo description
PROSITE profilePS500168.609139200IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590142197IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.244142198IPR001841Zinc finger, RING-type
CDDcd060081.58E-4231292No hitNo description
SMARTSM004380.29254272IPR000967Zinc finger, NF-X1-type
PfamPF014228.5256271IPR000967Zinc finger, NF-X1-type
CDDcd060081.21E-11299347No hitNo description
PfamPF014222.2E-6309326IPR000967Zinc finger, NF-X1-type
SMARTSM004385.5E-5309328IPR000967Zinc finger, NF-X1-type
CDDcd060088.14E-7363406No hitNo description
PfamPF014220.037373390IPR000967Zinc finger, NF-X1-type
SMARTSM004386.5E-4373392IPR000967Zinc finger, NF-X1-type
CDDcd060085.76E-13421469No hitNo description
PfamPF014220.036431449IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017431450IPR000967Zinc finger, NF-X1-type
PfamPF0142219489500IPR000967Zinc finger, NF-X1-type
CDDcd060084.95E-6517560No hitNo description
PfamPF014222.4521544IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8527546IPR000967Zinc finger, NF-X1-type
CDDcd060084.90E-5574622No hitNo description
PfamPF0142213584601IPR000967Zinc finger, NF-X1-type
SMARTSM004380.04584602IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015637652IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032637667IPR000967Zinc finger, NF-X1-type
CDDcd060083.07E-5665714No hitNo description
PfamPF014225669695IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0079676697IPR000967Zinc finger, NF-X1-type
PfamPF014246.7E-6808871IPR001374R3H domain
Gene3DG3DSA:3.30.70.3303.5E-4920963IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MSFPVQRNRR DNRSRNRTTS PVQGARREWV LRGPAPIATT AAPTPTTAAI PPTNYSPAVA  60
ADDVIRNGNN GDQNGRSVPP ANMTRNTSGA RCIMRQHSNQ RRERDKEKQR DHSREVKESK  120
DLNLPLLVQE IQDKLMKGSV ECMICYDMVR RSAPIWSCSS CYSIFHLACI KKWARAPTSV  180
DLSAEKGQGC NWRCPGCQAV QLMSSKEIRY VCFCGKRQDP PPDLYLTPHS CGEPCGKALE  240
KEVPGSGMAK EDLCPHLCVL QCHPGPCPPC KAFAPARWCP CGKQVITTRC SDRKSVLTCG  300
QRCDKLLDCG RHRCERTCHV GPCDPCDVLV NASCFCKKKI EVVLCGDMVV KGEIRADDGV  360
FSCSSICEKK LGCRNHFCDD ICHPGPCGEC DLLPSKIKTC CCGKMRLKED RESCLDPIST  420
CSQTCGKSLP CGVHHCKEMC HTGVCAPCPV LVTQKCRCGS TSRTVECYRT TAENENFTCD  480
RPCGQKKNCG RHRCSERCCP LSNPNKSFSG DWDPHLCSMP CGKKLRCRQH SCHSFCHSGH  540
CPPCLDTIFT DLTCTCGRTS IPPPLPCGTP PPSCQYPCSV PQPCGHPSTH SCHLGDCPPC  600
TIPIAKECIG GHVVLRNIPC GSKDIRCNKL CGKTRQCGLH ACARTCHPSP CDTPSGTSIG  660
SRASCGQPCG APRRDCRHTC TALCHPTGSC PDVRCEFPVS ITCSCGRINA TVPCDAGGSG  720
GGYSSDTVLE ASIVQKLPAP LQPVEGNVKV PLGQRKLMCD DECAKTERKK VLADAFGVTT  780
PNLDALHFGE NAVVSEVLSD LLRREPKWVL SVEERCKYLV LGRGRGGINA VKVHVFCPMS  840
KEKRDIVRLI AERWKLSVNA AGWEPKRFIV LHVTPKSKAP ARILGLKGCL ASNMLQPPVF  900
DPLVDMDPRL VVALFDLPRD ADISALVLRF GGECELVWLN DKNALAVFSD PARAATAMRR  960
LDQGSLYYGA VVVPHHGGAS ATAVAAAAAA NAWGATGPSK DGGAVTALKT NPWKKAVMQE  1020
PDGRESSWGA EDWSDNSVDV HSSIRKGNEV PISATNRWSV LDSENSSSTS SGRNDDSRNK  1080
PGTPLVSSVK PSSSSSVLPG QPQGAGINEI SDVVDDWEKA YD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRERDKEKQ
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107222.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A068VER70.0A0A068VER7_COFCA; Uncharacterized protein
STRINGXP_009360168.10.0(Pyrus x bretschneideri)
STRINGXP_008374871.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1