PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g08030
Common NameGSCOC_T00006062001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 398aa    MW: 44675.8 Da    PI: 6.4403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g08030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.52.1e-5631301129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdee++++yL+kkv +k++ +  +i+evd++k+ePwdLpkk+k +eke +fF++rd+ky+tg r+nrat sgyWkatgkdke+++ kg 
  Cc00_g08030   3 LPPGFRFHPTDEEIITHYLTKKVVDKNFGA-IAIAEVDMNKCEPWDLPKKAKMGEKEHFFFCQRDRKYPTGMRTNRATGSGYWKATGKDKEIYKGKGC 99 
                  79*************************999.88***************99999*****************************************9*** PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kktLvfy+grapkgekt+Wvmheyrle
  Cc00_g08030 100 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 130
                  *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-622155IPR003441NAC domain
PROSITE profilePS5100558.1083154IPR003441NAC domain
PfamPF023657.5E-294129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDLPPGFRFH PTDEEIITHY LTKKVVDKNF GAIAIAEVDM NKCEPWDLPK KAKMGEKEHF  60
FFCQRDRKYP TGMRTNRATG SGYWKATGKD KEIYKGKGCL VGMKKTLVFY RGRAPKGEKT  120
NWVMHEYRLE GRFSYYNFPK GAKDEWVVCR VFHKNVGIRR SPLRDLTRAD SFLDHLLDSP  180
SSLPPLMDIP NSSNRPGISS FSHEEDQEFK GATTSSGKSS DHGTLPSYFS TNLNNSTLQM  240
QQDLNTFLMP SYNYAFKTSY EAGSSNHDPS SFFRPPISVP DANFHGYQNE SYSSFSGFEA  300
TPDHQANSTT LSAPNQQGIS DPGKQCKMEQ FSSTNSMVSP SQDTGISNDM APEISSVVSK  360
INVESDKCMK DLEGISVDPN MSDLDSLWNI TDFTTEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-52115518169NAC domain-containing protein 19
3swm_B2e-52115518169NAC domain-containing protein 19
3swm_C2e-52115518169NAC domain-containing protein 19
3swm_D2e-52115518169NAC domain-containing protein 19
3swp_A2e-52115518169NAC domain-containing protein 19
3swp_B2e-52115518169NAC domain-containing protein 19
3swp_C2e-52115518169NAC domain-containing protein 19
3swp_D2e-52115518169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066455.10.0NAC domain-containing protein 46-like
TrEMBLA0A068VES10.0A0A068VES1_COFCA; Uncharacterized protein
STRINGVIT_08s0007g07640.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-102Arabidopsis NAC domain containing protein 87