PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g08300
Common NameGSCOC_T00004570001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19430.5 Da    PI: 10.3106
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g08300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.6e-181863449
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 e + n +vtfskRrng++ KA+EL++L++aeva+++fs+  + y +
  Cc00_g08300 18 EKNNNLHVTFSKRRNGLFMKANELCTLTGAEVALLVFSPGKRAYSF 63
                 567789********************************98888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.848767IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-21766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-21882IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-13929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-201763IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAKKLTRGHQ KVPIVEMEKN NNLHVTFSKR RNGLFMKANE LCTLTGAEVA LLVFSPGKRA  60
YSFGHSSFES VIDKFVGNKP SPSVHGGTNH HVANHHGDNI DELNNKIIDL KTQLKANKKL  120
EEVLGQMIKE GQHKNWWQAP IGEMNLDQLL MMKKALEELK KKVQDELKRQ I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027171141.11e-123agamous-like MADS-box protein AGL62
TrEMBLA0A068VEW21e-122A0A068VEW2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-37AGAMOUS-like 62