PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g08320
Common NameGSCOC_T00004575001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 253aa    MW: 28312.2 Da    PI: 9.8466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g08320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.6e-202163749
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 s  qvtfskRrng++KKA+EL++L++ae+a+++fs+ +k y +
  Cc00_g08320 21 SHLQVTFSKRRNGLFKKASELCTLTEAEIALVVFSPGQKAYSF 63
                 6679**********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.348767IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-27766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-23887IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-16929IPR002100Transcription factor, MADS-box
PfamPF003193.2E-211863IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAKKLTKGRQ KVPIVKMETM SHLQVTFSKR RNGLFKKASE LCTLTEAEIA LVVFSPGQKA  60
YSFGHLSFES VVDKYLGRNP TPSIHGSIDR YVVANYQEDI SEQNNKLTAL EKLLEAEKRR  120
GEVFDQMAKE AQQKYWWRAP IKELNLEELQ ELEKALQGLK KKIENELHKS PIEAINIPQY  180
LIGQSNSERN IGLSNGMGVP YGNRASDPNG FSLFGAIARD NVGTTSSNAR ATVIGDSNMS  240
HGNNSNRFYK FL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123772.10.0agamous-like MADS-box protein AGL62
TrEMBLA0A068VHW50.0A0A068VHW5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-31AGAMOUS-like 62