PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g09050
Common NameGSCOC_T00012318001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 511aa    MW: 55283.4 Da    PI: 7.9668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g09050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11137161226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++ t tCkyGd+CkF H+
  Cc00_g09050 137 GEKDCAYYMLTRTCKYGDSCKFDHP 161
                  7889********************8 PP
2zf-CCCH375.6e-12188213126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+ff++t  Ck+G rCkF+H+
  Cc00_g09050 188 PGEPDCPFFMKTQRCKFGTRCKFNHP 213
                  5789*********************8 PP
3zf-CCCH39.49.7e-13236260327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C f+++tG+Ck+G++CkF+H++
  Cc00_g09050 236 EPPCAFYMKTGQCKFGATCKFHHPK 260
                  79*********************96 PP
4zf-CCCH34.24.2e-11312335326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++ C+f+++tG CkyG +C+++H+
  Cc00_g09050 312 EVDCPFYLKTGSCKYGQTCRYNHP 335
                  689********************9 PP
5zf-CCCH38.42.1e-12394419126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+f+++tG+Ck+G rCkF+H+
  Cc00_g09050 394 PGEAACDFYMKTGECKFGQRCKFHHP 419
                  57899********************8 PP
6zf-CCCH36.67.5e-12453474627
                  -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                  C+++++tGtCkyG++C+F H+p
  Cc00_g09050 453 CPYYMKTGTCKYGATCRFDHPP 474
                  ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.516135163IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5136162IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4141160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094187215IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6187214IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9189213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6192217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5193214IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.948233261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6235261IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10236260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6238261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605309337IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5309336IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-9312335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5313336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4315334IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6393420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737393421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6394422IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10395419IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5399419IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629447475IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6447474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6451474IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5453472IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9453474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MVADSFLSSS DASSLLGSSR YLTSSDPLFS SSAARLFSHS DSYSFRIPGL DAVSPTTTSK  60
PASSSSSWPG PPGVDVADPF LLATLKRSSS QALYHQTVFG AHNPIGQTEA WFSTNPLAKR  120
PRFESAGNLP IYPQRPGEKD CAYYMLTRTC KYGDSCKFDH PIWVPEGGIP DWKEVPLVDT  180
SEPLPERPGE PDCPFFMKTQ RCKFGTRCKF NHPIEKITPL VALETNSAVL PERPSEPPCA  240
FYMKTGQCKF GATCKFHHPK DLQISTAGQE NSFGEQSKLS TNETSGDFKA VKPPVTPAMM  300
HNTKGLPIRL GEVDCPFYLK TGSCKYGQTC RYNHPDRNAI NPPAAAIGAA YIASPAPNLS  360
IGIVNPAASI LQTFDPRLTQ TTVGLAAAIY PQRPGEAACD FYMKTGECKF GQRCKFHHPI  420
DRSAPIISGK ETQQENVKLT RAGLPRREGA IHCPYYMKTG TCKYGATCRF DHPPPGEVLA  480
MGTTAQGTWS PTGGEAEEGS SGPETGGEKQ *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064369.10.0zinc finger CCCH domain-containing protein 37-like isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A068VET80.0A0A068VET8_COFCA; Uncharacterized protein
STRINGXP_009782011.10.0(Nicotiana sylvestris)
STRINGXP_010260864.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-180floral homeotic protein (HUA1)