PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g10600
Common NameGSCOC_T00001822001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 151aa    MW: 16909.8 Da    PI: 4.9303
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g10600genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1702.7e-5317112297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvtseas+kc++e+rkt+ngdd++w+l+tlGf+dy+ plk yl +yreleg++
  Cc00_g10600  17 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFIGFVTSEASEKCRKERRKTVNGDDICWSLGTLGFDDYAGPLKRYLDRYRELEGDR 112
                  89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5212138IPR009072Histone-fold
SuperFamilySSF471134.68E-4019138IPR009072Histone-fold
PfamPF008082.2E-262285IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.5E-175068No hitNo description
PRINTSPR006158.5E-176987No hitNo description
PRINTSPR006158.5E-1788106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVDNLGASAS SEEGGIKEQD RLLPIANVGR IMKQILPPNA KISKEAKETM QECVSEFIGF  60
VTSEASEKCR KERRKTVNGD DICWSLGTLG FDDYAGPLKR YLDRYRELEG DRSGNQDKVS  120
NSAEEMEEPS SYRSNIVQPR NQAEPSYRRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4416107192Transcription factor HapC (Eurofung)
4g92_B9e-4416107192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118152.11e-108nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A068VIP21e-106A0A068VIP2_COFCA; Uncharacterized protein
STRINGcassava4.1_018746m1e-77(Manihot esculenta)
STRINGXP_002516901.12e-77(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]