PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g12640
Common NameGSCOC_T00005842001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 182aa    MW: 20252.6 Da    PI: 4.4445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g12640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.6e-1268153595
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   + s+v+k++ +v+p +  ++  +k+       + + +g+sWe+++   ++s++  ++ + Wk+F+++ngLk+gD +  +l+++s+++  +k
  Cc00_g12640  68 VSFSHVNKLCHMVFPSRLRSDLPSKT----VPAVVTCRGKSWEMTF--LGGSQKLRFEvQSWKRFASDNGLKVGDAIFWELMESSDEKVSFK 153
                  5669999********99876664332....33566789********..999999555449********************996655544333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-1159158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1260150IPR015300DNA-binding pseudobarrel domain
CDDcd100179.61E-1262158No hitNo description
PROSITE profilePS5086310.96964160IPR003340B3 DNA binding domain
SMARTSM010190.004464160IPR003340B3 DNA binding domain
PfamPF023628.1E-1067158IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSEEGKMESN EKVDSSAHTA DGEVIDVNVQ DSEAKDIELH HDNDGLDQSL VDDELSPLSE  60
EPFYHHVVSF SHVNKLCHMV FPSRLRSDLP SKTVPAVVTC RGKSWEMTFL GGSQKLRFEV  120
QSWKRFASDN GLKVGDAIFW ELMESSDEKV SFKVQIIRGD FPSELQAQVN GETAATPILI  180
E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101973.11e-132B3 domain-containing protein Os04g0386900-like
TrEMBLA0A068VGG71e-130A0A068VGG7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-06B3 family protein