PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g14270
Common NameGSCOC_T00010610001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 288aa    MW: 33071.5 Da    PI: 8.4665
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g14270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.42.1e-47121383128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPt+eel+++yLk+ ++g+k++  +vi  ++iy+++Pw+Lp ++k +e+ewyfF++rd+++ +g r+nr+tk+g+Wkatg+d+++ s    ++
  Cc00_g14270  12 PGFRFHPTEEELLSFYLKRTASGRKIRS-DVIGFLNIYQHDPWELPGMAKIGEREWYFFVHRDRRHGHGGRPNRTTKDGFWKATGSDRQIRSLsdPKK 108
                  9**************************9.99***************888999**************************************98766778 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  + glkktLvfykgrap+g++tdW+m+eyrl
  Cc00_g14270 109 VLGLKKTLVFYKGRAPRGSRTDWIMNEYRL 138
                  8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.70510158IPR003441NAC domain
SuperFamilySSF1019418.76E-5611158IPR003441NAC domain
PfamPF023652.0E-2412138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDNNSLGELP LPGFRFHPTE EELLSFYLKR TASGRKIRSD VIGFLNIYQH DPWELPGMAK  60
IGEREWYFFV HRDRRHGHGG RPNRTTKDGF WKATGSDRQI RSLSDPKKVL GLKKTLVFYK  120
GRAPRGSRTD WIMNEYRLPD NHHHLPKEDV VLCKIYRKAT SLKILEHRAA MEDIISKTVN  180
PTLSSTDQSQ EGKIPEENLG ESFSQKQSTI NLPMTKQEDD DLSVPNSSVK FGCLNYNCDL  240
KELQVLDVPK FSMDATTDAF WTQMRSPWLD NWSPSVYANL LNCSPHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-46216111171NAC domain-containing protein 19
3swm_B3e-46216111171NAC domain-containing protein 19
3swm_C3e-46216111171NAC domain-containing protein 19
3swm_D3e-46216111171NAC domain-containing protein 19
3swp_A3e-46216111171NAC domain-containing protein 19
3swp_B3e-46216111171NAC domain-containing protein 19
3swp_C3e-46216111171NAC domain-containing protein 19
3swp_D3e-46216111171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076484.10.0NAC domain-containing protein 22-like isoform X1
SwissprotQ10S653e-90NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A068VGL60.0A0A068VGL6_COFCA; Uncharacterized protein
STRINGXP_008382468.11e-107(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.15e-85NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]