PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g14290

Common Name

GSCOC_T00010612001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 280aa MW: 31798.4 Da PI: 7.9359

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g14290	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.7	1.7e-47	11	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPt+eelv++yLk+ ++gkkl+ ++i ++iy+++Pw+Lp ++k +e+ewyfF++rd+++ +g r+nr+tk+g+Wkatg+d+++ s+ + Cc00_g14290 11 LPGFRFHPTEEELVSCYLKRIASGKKLPS-DIIGFLNIYHHDPWELPGMAKMGEREWYFFVHRDRRHGHGGRPNRTTKDGFWKATGSDRQIRSTsePK 107 69************************9.99***********8888999*********************************9986667 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++ glkk+Lvfykgrap+g++tdWvm+e+rl Cc00_g14290 108 KVLGLKKILVFYKGRAPRGSRTDWVMNEFRL 138 78*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.733	10	156	IPR003441	NAC domain
SuperFamily	SSF101941	6.67E-56	11	156	IPR003441	NAC domain
Pfam	PF02365	9.1E-24	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDDNSVGELT LPGFRFHPTE EELVSCYLKR IASGKKLPSD IIGFLNIYHH DPWELPGMAK 60 MGEREWYFFV HRDRRHGHGG RPNRTTKDGF WKATGSDRQI RSTSEPKKVL GLKKILVFYK 120 GRAPRGSRTD WVMNEFRLPD HPLPKEDVVL CKIYRKATSL KILEHKAAME DVISKTLEPS 180 LSSTQPQEGI PQENLAKSLA QNQSMTNLPL TKHEDDDLLV LNSPVKFGCL KYSNDSKELQ 240 ALDVPKLSMD ETADAFWTPM RSPWLENCSL DAFASLLNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-47	4	156	8	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073432.1	0.0	NAC domain-containing protein 22-like
Swissprot	Q10S65	3e-83	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A068VHA4	0.0	A0A068VHA4_COFCA; Uncharacterized protein
STRING	Migut.B00028.1.p	1e-101	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-78	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]