PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g15720

Common Name

GSCOC_T00006890001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 65aa MW: 7055.3 Da PI: 9.5874

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g15720	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	48.3	3e-15	4	63	1	55
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +++l++a pe+ r+ Cc00_g15720 4 SCNGCRVLRKGCSENCSIKPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRP 63 6*****************************************************999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.506	3	64	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-11	4	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IKPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB623910	2e-53	AB623910.1 Camellia sinensis DNA, SSR marker, MSE0196.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073729.1	4e-40	LOB domain-containing protein 41-like
Refseq	XP_027077434.1	4e-40	LOB domain-containing protein 41-like
Refseq	XP_027077531.1	4e-40	LOB domain-containing protein 41-like
Refseq	XP_027179837.1	4e-40	LOB domain-containing protein 41
Swissprot	Q9M886	4e-39	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A068VH51	4e-40	A0A068VH51_COFCA; Uncharacterized protein
STRING	POPTR_0004s09920.1	5e-39	(Populus trichocarpa)
STRING	cassava4.1_012667m	9e-39	(Manihot esculenta)
STRING	cassava4.1_012877m	7e-39	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21959	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-41	LOB domain-containing protein 41