PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g16650
Common NameGSCOC_T00009359001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 236aa    MW: 26703.2 Da    PI: 4.9489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g16650genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.5e-114892554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 + e Er+RR+++ + ++ Lr ++P+ +      K++Ka+i + A+ YI++L
  Cc00_g16650 48 NIESERKRRQKLTETLHALRAVVPNiS------KMDKASIIKDAIGYIQEL 92
                 5689*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4474392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1643109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-104697No hitNo description
PfamPF000101.7E-84892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-1549110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDDVDVYKDY WENMILQTEQ LGRNFDESFS FYDSSSPDGA QSSAASKNIE SERKRRQKLT  60
ETLHALRAVV PNISKMDKAS IIKDAIGYIQ ELHNQERMIQ AEISELESRR SIFLDFDQEI  120
SYNSKPKRSR FEQTCDSAGS RSSPIEVLEL RVSHMGEKTI VVSLTCSKRT DTMVKICEVF  180
ESLNLKIITA NITAFSGRLL KTVFLEANEE EKDVVKIKIQ TAIAALNDPD SPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-134892953Transcription factor MYC2
5gnj_B1e-134892953Transcription factor MYC2
5gnj_E1e-134892953Transcription factor MYC2
5gnj_F1e-134892953Transcription factor MYC2
5gnj_G1e-134892953Transcription factor MYC2
5gnj_I1e-134892953Transcription factor MYC2
5gnj_M1e-134892953Transcription factor MYC2
5gnj_N1e-134892953Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065577.11e-163transcription factor bHLH35-like isoform X1
SwissprotQ2HIV96e-79BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A068VKQ51e-173A0A068VKQ5_COFCA; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-74bHLH family protein