PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g17370
Common NameGSCOC_T00009096001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 498aa    MW: 54623 Da    PI: 10.2072
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g17370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-1218931696
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEE CS
           B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkv 96
                   +p +f+++++++   + t +l+d+sg sW+vk+  r+ ++++vl++GW++F   + L  +  f++F++ g+ +f   v +
  Cc00_g17370 18 YEIPTHFLSKIEEE--VPDTAILRDSSGCSWSVKV--RQERNGIVLADGWENFSVHHSLVpSASFLLFRYCGNWCF--EVDI 93
                 569*****999744..5669***************..***********************888999***9998888..5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0042597IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-14996IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-141495IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-91993IPR003340B3 DNA binding domain
CDDcd100175.94E-92094No hitNo description
PROSITE profilePS5086310.82097IPR003340B3 DNA binding domain
PfamPF127765.3E-16356450IPR024752Myb/SANT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MLHLFWPSIP SNGVCSEYEI PTHFLSKIEE EVPDTAILRD SSGCSWSVKV RQERNGIVLA  60
DGWENFSVHH SLVPSASFLL FRYCGNWCFE VDIFACSGLE KEIVDASGNS EASPSGVKSK  120
KGGRGKRTVH SVKDNLPKSC VPGPRSLSLK NKKDRRGKRS VGSAKDHLPK YCVSGPDIFG  180
DSGLEKEILS AGGNNEAGSS GVKNKKGGRG ARSVGSVKDH LPKSCVPGPR SLSLKNKKDR  240
RGERSVGSAK DHLPKYCVSG PDIFGDSGLE KEIVSAGGDN KAGPSGVKNK KGGRGTRSVG  300
SVKDHVPKSH VPGPASLNLK NKKDRQGKRS VGSMKEHLPK SRVPGPGVPY RTRIAWNPER  360
LGLYLDSCLE EAAKGRRRSG NLTPESWQKV QSVFKEKTNI DLTPTQLSNF WSVLRKRYIV  420
WSKIIAEAGN GGYDPVANKI NWNQQQWEEY IKVNPVAKRF RKKKLEYPEK MKLLFDCYTA  480
VHEDGGVSSD EMYYSSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027088465.10.0uncharacterized protein LOC113709809, partial
RefseqXP_027183861.10.0uncharacterized protein LOC113782150, partial
TrEMBLA0A068VIC80.0A0A068VIC8_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.19e-09B3 family protein