PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g18110
Common NameGSCOC_T00003011001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 114aa    MW: 13606 Da    PI: 10.2795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g18110genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-1411101192
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k l+ +d +++  + +p  f+ +   +++++++++   +++  +sW v++  rkk++  y+ +  W +Fvk+++Lk gD ++F+l+++++f+ 
  Cc00_g18110  11 FIKLLM-EDDFTRE-ILIPYAFVMNLkeKLSSRCTIESEAKNSVRNSWPVRI--RKKGRYyYICRLSWPKFVKDHHLKLGDYLLFHLIDKTTFRS 101
                  566664.5555555.899*****5557777777777777777777*******..888888677889*********************98777755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-16899IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-158100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.0939112IPR003340B3 DNA binding domain
CDDcd100172.17E-11998No hitNo description
PfamPF023621.2E-1211101IPR003340B3 DNA binding domain
SMARTSM010198.9E-711103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEQNFNFNPS FIKLLMEDDF TREILIPYAF VMNLKEKLSS RCTIESEAKN SVRNSWPVRI  60
RKKGRYYYIC RLSWPKFVKD HHLKLGDYLL FHLIDKTTFR SKAIWCGLLP KKV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077146.11e-68B3 domain-containing protein REM23-like
RefseqXP_027178188.11e-68B3 domain-containing protein REM23-like
TrEMBLA0A068VL561e-78A0A068VL56_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.17e-09B3 family protein