PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g22440
Common NameGSCOC_T00013580001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 353aa    MW: 39759.8 Da    PI: 7.7722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g22440genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.4e-06190209120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  + C++C+k+F+r  n++ H+
  Cc00_g22440 190 FACNICNKTFNRYNNMQMHM 209
                  78*****************9 PP
2zf-C2H2163.3e-05274296123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +CgksF  k + ++H +++
  Cc00_g22440 274 FNCRKCGKSFAVKGDWRTHEKNC 296
                  78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-5176213No hitNo description
SMARTSM003550.095190212IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492190217IPR007087Zinc finger, C2H2
PfamPF139123.7E-4190209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5190209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SMARTSM00355190237269IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.81E-6260294No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6261294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035541274294IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829274294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGIRTTNCHV QDMNMCFQAA PTFIEWLKPT HESSSSSSSS SSSTLSSTQQ EFLDQFTKPM  60
SFLKLPLFYQ QQEEELAVHE SIQCLPLLSQ FTDTKKPLKE ELDEDGIGQE ESIFGIKGSD  120
KVEKVTVALH IGLPDSGSAS SDSETKPYNL KEKPVDNYQK SPSTDGCTFN NESRFWIPTP  180
AQILVGPMQF ACNICNKTFN RYNNMQMHMW GHGSEFRKGP ESLRGAQPAA MLRLPCYCCA  240
QGCKNNINHP RAKPLKDFRT LQTHYKRKHG AKPFNCRKCG KSFAVKGDWR THEKNCGKLW  300
YCTCGSDFKH KRSLKDHIRS FGNGHSPHPS LEGFEDEKEC ITGGSEDENA QY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083750.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-122ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A068VJJ30.0A0A068VJJ3_COFCA; Uncharacterized protein
STRINGVIT_06s0080g00270.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-121WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]