PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g26010
Common NameGSCOC_T00003989001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 153aa    MW: 17939.7 Da    PI: 10.1696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g26010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.29.6e-3811231128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkg 97 
                  +p+G+rF Ptdeel+v+yL+k++++ +l+l + i+e+++y ++P++L + + ++ + wyfF+   +ky++g+r++r   + g+Wk tgkdk+++  +g
  Cc00_g26010   1 MPRGYRFCPTDEELIVHYLRKRIAKAPLPL-NRIHEANVYGHNPQELTSYF-HNVNGWYFFTYLTNKYPKGSRPSRsCGDGGFWKPTGKDKKIYY-NG 95 
                  699***************************.77**************8544.5689********************666799*************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg +k+L f       g+kt W mheyr+
  Cc00_g26010  96 NTVGYRKSLDFLL---GPGQKTAWKMHEYRI 123
                  9***********5...45688********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.5641143IPR003441NAC domain
SuperFamilySSF1019416.67E-421128IPR003441NAC domain
PfamPF023652.3E-212123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPRGYRFCPT DEELIVHYLR KRIAKAPLPL NRIHEANVYG HNPQELTSYF HNVNGWYFFT  60
YLTNKYPKGS RPSRSCGDGG FWKPTGKDKK IYYNGNTVGY RKSLDFLLGP GQKTAWKMHE  120
YRIHANNPKV QASTYFLINL LYILFIYFKV FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-28112315140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067445.13e-89NAC domain-containing protein 2-like
RefseqXP_027067446.13e-89NAC domain-containing protein 2-like
RefseqXP_027067447.13e-89NAC domain-containing protein 2-like
RefseqXP_027067448.13e-89NAC domain-containing protein 2-like
RefseqXP_027067451.13e-89NAC domain-containing protein 2-like
TrEMBLA0A068VKP11e-110A0A068VKP1_COFCA; Uncharacterized protein
STRINGEOY092702e-36(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.19e-31NAC domain containing protein 76