PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g27610
Common NameGSCOC_T00003289001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 154aa    MW: 17798.9 Da    PI: 5.0725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g27610genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-114992553
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                 + e Er+RR+++ + ++ Lr ++P+ +      K++Ka+i + A+ YI++
  Cc00_g27610 49 NIESERKRRQKLTETLHALRAVVPNiS------KMDKASIIKDAICYIQQ 92
                 5689*********************66......***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-1644110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5454493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-94798No hitNo description
PfamPF000101.4E-84992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1450111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDDMDVVYKY YWENMILQTE QLGRNFDESF SFYDSSSPDG AQSSAASKNI ESERKRRQKL  60
TETLHALRAV VPNISKMDKA SIIKDAICYI QQFHNQERMI QAEISELESK RSIFLDFDQE  120
ISYNSKPKRS RFEQTCDSAK SRSSPIEVFE VGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1349113971Transcription factor MYC2
5gnj_B2e-1349113971Transcription factor MYC2
5gnj_E2e-1349113971Transcription factor MYC2
5gnj_F2e-1349113971Transcription factor MYC2
5gnj_G2e-1349113971Transcription factor MYC2
5gnj_I2e-1349113971Transcription factor MYC2
5gnj_M2e-1349113971Transcription factor MYC2
5gnj_N2e-1349113971Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065577.19e-96transcription factor bHLH35-like isoform X1
SwissprotQ700E31e-33BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A068VL501e-109A0A068VL50_COFCA; Uncharacterized protein
STRINGXP_008223870.12e-51(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.43e-32bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]