PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g29370
Common NameGSCOC_T00012746001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 178aa    MW: 20354.4 Da    PI: 8.3747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g29370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.8e-0957104455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L++++P +    +k +  a +L + ++Y++sLq
  Cc00_g29370  57 SHSLAERVRRGKINERLRCLQDIVPGC----HKTMGMAVMLDEIINYVQSLQ 104
                  8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1751120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-951108No hitNo description
PROSITE profilePS5088815.00853103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1653115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-657104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-859109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
FNLFHSHLFE VELTCLYCLQ CSQITGKGKR IRSNRKDEEK PKEVVHVRAK RGQATDSHSL  60
AERVRRGKIN ERLRCLQDIV PGCHKTMGMA VMLDEIINYV QSLQNQVEFL SMKLTAASNF  120
YDFNRETDTI DTLQRAKAFE AMKMQKLMKE EFDGVPSTQV GPLDQTFGCY PSLPFNT*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123440.11e-115transcription factor BEE 3-like
SwissprotQ8GZ137e-60BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A068VLW71e-131A0A068VLW7_COFCA; Uncharacterized protein (Fragment)
STRINGSolyc12g036470.1.11e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-62BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]