PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g30840
Common NameGSCOC_T00006253001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 196aa    MW: 22640.5 Da    PI: 4.6785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g30840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.2e-3381261128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGf+FhPtdeel+ ++L++kv++ +++  ++i+e+d+++++Pw+L++k+  ++++wyfFs+  +         rat++g W++   d++++++ g+
  Cc00_g30840   8 LPPGFHFHPTDEELIGYFLHRKVTNLPCNP-SIIPELDLCSTDPWELNEKALMSQNQWYFFSQVIQ--------GRATEKGHWEELDMDEDIVTSAGK 96 
                  79*************************999.89**************977778899******9755........699********************* PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  + g+kk  vf   + +k  +t+Wvm+ey+l
  Cc00_g30840  97 KLGIKKFWVFCIDQVQKRIQTNWVMEEYHL 126
                  ***********9999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-416151IPR003441NAC domain
PROSITE profilePS5100538.6278152IPR003441NAC domain
PfamPF023653.8E-219126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDSRTILPP GFHFHPTDEE LIGYFLHRKV TNLPCNPSII PELDLCSTDP WELNEKALMS  60
QNQWYFFSQV IQGRATEKGH WEELDMDEDI VTSAGKKLGI KKFWVFCIDQ VQKRIQTNWV  120
MEEYHLFKRH VKKGRDGEKD LGEWVLCRVH HANADSQGIY SVQAGNDEEV ELSLLDEVFL  180
SMEDNDDAIS FPKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-33815717170NO APICAL MERISTEM PROTEIN
1ut4_B9e-33815717170NO APICAL MERISTEM PROTEIN
1ut7_A9e-33815717170NO APICAL MERISTEM PROTEIN
1ut7_B9e-33815717170NO APICAL MERISTEM PROTEIN
3swm_A8e-33815720173NAC domain-containing protein 19
3swm_B8e-33815720173NAC domain-containing protein 19
3swm_C8e-33815720173NAC domain-containing protein 19
3swm_D8e-33815720173NAC domain-containing protein 19
3swp_A8e-33815720173NAC domain-containing protein 19
3swp_B8e-33815720173NAC domain-containing protein 19
3swp_C8e-33815720173NAC domain-containing protein 19
3swp_D8e-33815720173NAC domain-containing protein 19
4dul_A9e-33815717170NAC domain-containing protein 19
4dul_B9e-33815717170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076922.11e-143NAC domain-containing protein 104-like
TrEMBLA0A068VPV91e-144A0A068VPV9_COFCA; Uncharacterized protein
STRINGVIT_04s0044g01500.t012e-59(Vitis vinifera)
STRINGXP_009792377.12e-59(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-41xylem NAC domain 1