PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g31490
Common NameGSCOC_T00024832001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 218aa    MW: 24413.1 Da    PI: 10.4272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g31490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-063961123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Cc00_g31490 39 FVCEICNKGFQRDQNLQLHRRGH 61
                 89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.12E-73861No hitNo description
Gene3DG3DSA:3.30.160.605.6E-63861IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.7E-53961IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0173961IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9493961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM0035525080110IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4103136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.12E-7110135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MIAAQVGPVK KKRNLPGMPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG  60
HNLPWKLRQR NGKEVKKRVY VCPEATCIHH DPSRALGDLT GIKKHFCRKH GEKKWKCERC  120
SKKYAVISDW KAHTKTCGTR EYRCDCGTLF SRRDSFITHR AFCNALAQES ARSQTQTLAI  180
TNEEGTLKVQ AQTTTTRTSS SSPPLPPLTP STGVLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34111172364Zinc finger protein JACKDAW
5b3h_F1e-34111172364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093394.11e-162zinc finger protein ENHYDROUS-like
RefseqXP_027147859.11e-160zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-113IDD1_ARATH; Zinc finger protein ENHYDROUS
SwissprotQ9SCQ61e-113IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A068UGC61e-159A0A068UGC6_COFCA; Uncharacterized protein
TrEMBLA0A068VQ131e-161A0A068VQ13_COFCA; Uncharacterized protein
STRINGGorai.009G203800.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-115C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]