PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g32910
Common NameGSCOC_T00007856001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family E2F/DP
Protein Properties Length: 111aa    MW: 12820.9 Da    PI: 7.0396
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g32910genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP39.21.1e-1272111852
      E2F_TDP   8 lltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNV 52 
                  l t++f++l++++e+gi++lne+ak+L   ++  ++RRiYDi+ V
  Cc00_g32910  72 LQTKNFVNLIKHAEDGILDLNEAAKTL---EM--SKRRIYDITSV 111
                  569************************...99..********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.2E-1172111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.8E-973111IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-573111IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MYGQLFMLFS CHAFNLFFHY VGVRKGICLE ETHTDQRSHL QLLCPMPKEE KQGAAAMTDL  60
WTSYFLIFLS GLQTKNFVNL IKHAEDGILD LNEAAKTLEM SKRRIYDITS V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068VMP22e-78A0A068VMP2_COFCA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.34e-16E2F transcription factor 1