PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g33210

Common Name

GSCOC_T00013033001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 152aa MW: 16639.7 Da PI: 10.1493

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g33210	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.5	1.7e-13	25	70	33	77
trihelix 33 evskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 + s+kmre+gf rsp++C++kw+nl k++kk+k++++++ ++++s Cc00_g33210 25 WLSSKMREKGFDRSPTMCTDKWRNLLKEFKKLKQQDRGNnNCNNSG 70 589*******************************999874466554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.8E-10	26	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MQWQTSRKSD GGGLAVAAGK WGSGWLSSKM REKGFDRSPT MCTDKWRNLL KEFKKLKQQD 60 RGNNNCNNSG SASSANKMWY YKELEELLRD RAKNGSYKSP PPPPPPPPPP SAKVEAYIHF 120 PDKGGLEDGS IPFGSVEGKG RGGNLELFGH V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-19	26	83	39	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027101967.1	2e-52	trihelix transcription factor GT-1-like
Swissprot	Q9FX53	2e-35	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A068VMS8	1e-106	A0A068VMS8_COFCA; Uncharacterized protein
STRING	VIT_14s0171g00450.t01	3e-39	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	3e-32	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]