PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g35570
Common NameGSCOC_T00008598001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 37aa    MW: 4414.51 Da    PI: 11.9104
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g35570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.22.5e-09935127
                 S---SHHHHHHHHHHHHHHHHHHHHHH CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeEL 27
                 k+ie+k  r v f+kRr+g++  A EL
  Cc00_g35570  9 KKIEDKAMRRVMFCKRRKGLFRMAMEL 35
                 78************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.769136IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-11135IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-91035IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-82336IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 37 aa     Download sequence    Send to blast
MGKRRIEIKK IEDKAMRRVM FCKRRKGLFR MAMELG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068VNR35e-15A0A068VNR3_COFCA; Uncharacterized protein