PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04560
Common NameGSCOC_T00041185001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 410aa    MW: 47096.5 Da    PI: 4.791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.91.5e-3011618954128
          NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +ekewyfF++r++ky++g+r+nra+ +gyWkatg dk+v + +g+lvg kk Lvfy+g+ pkg+kt+W+mheyr+
  Cc01_g04560 116 GEKEWYFFTPRNRKYRNGERPNRAAGTGYWKATGADKPVNH-DGSLVGFKKALVFYEGKPPKGVKTNWIMHEYRV 189
                  679**************************************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.12365215IPR003441NAC domain
SuperFamilySSF1019419.68E-4384215IPR003441NAC domain
PfamPF023657.1E-1988189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEMDQQNQPI REVFGTSPNT IQSLPPPFNE LQQEKPSLLP TSSTELQQEE PLLLAASSSN  60
ASSNNDGVNE FFDEEEEFID HAFFESFPPG YRFCPKDGEE IIHNIRDYCE RYPPIGEKEW  120
YFFTPRNRKY RNGERPNRAA GTGYWKATGA DKPVNHDGSL VGFKKALVFY EGKPPKGVKT  180
NWIMHEYRVK EPPRKRSNTM DMRLDDFVLC RIYKKTDKSF KSRPRNEDSE DLDQNDYPTP  240
QGNERLDQNN AYPLDMDMGN KNDLGGLDRE LNAFEASSGL VQSEYHIGLH EIFNVMGTSL  300
LADSVKCFNN NFQIPFNCGA KPVNYKGFVY PMENALMPKY LREAPDVKPR KAMWNITKDY  360
ETFNLSPEID FGTTIDFPDL DNLMNNRPSN SCFENSNNPF DSPPMPRRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-458622116171NO APICAL MERISTEM PROTEIN
1ut4_B1e-458622116171NO APICAL MERISTEM PROTEIN
1ut7_A1e-458622116171NO APICAL MERISTEM PROTEIN
1ut7_B1e-458622116171NO APICAL MERISTEM PROTEIN
4dul_A1e-458622116171NAC domain-containing protein 19
4dul_B1e-458622116171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122236.10.0NAC domain-containing protein 55-like
TrEMBLA0A068V1E70.0A0A068V1E7_COFCA; Uncharacterized protein
STRINGXP_009759087.15e-62(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.18e-47NAC domain containing protein 32