PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04590
Common NameGSCOC_T00041199001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 350aa    MW: 39741 Da    PI: 6.0647
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.82.1e-36601852128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  ppG+rF P d+el+v+yLkkk+ +++l+  + i++v++y + P  L  + + a+  +wyfF++r+k+++ ++r+ r + sg+Wk tg+d ++   k++
  Cc01_g04590  60 PPGYRFCPWDSELIVDYLKKKILEEPLPR-NQIRDVNVYLHSPDILTeRYTPAGLGQWYFFTQREKNNEYSSRQYREAGSGFWKVTGEDSAIQL-KDT 155
                  9**************************99.77**************9345555666**************************************.889 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg kk  vfy+g+ p g+kt+W+m+eyr+
  Cc01_g04590 156 VVGFKKAWVFYEGKVPVGRKTNWTMQEYRV 185
                  9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-4357212IPR003441NAC domain
PROSITE profilePS5100543.09259212IPR003441NAC domain
PfamPF023653.0E-2160185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDVDEQQQQQ QGVDQSYVNK CQEQVRPFLA ALDINPGDMD GNSQFTDQEG FEESYFDSFP  60
PGYRFCPWDS ELIVDYLKKK ILEEPLPRNQ IRDVNVYLHS PDILTERYTP AGLGQWYFFT  120
QREKNNEYSS RQYREAGSGF WKVTGEDSAI QLKDTVVGFK KAWVFYEGKV PVGRKTNWTM  180
QEYRVNESPR QESASSTGTA LHDFVLCRIY KTKPENSNKS RGSQISQTQM RGQILEQPTQ  240
EGTVIYLQNG YTPIHPCIRT SSSRPVNYLG GMNSIGLPEN HRVSANSVTF TNQANRSGQL  300
IADGASTSTQ IRPMILTFPS RTDFMAERFQ QADGSQGNVQ TTLQNRHSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-345821116164NO APICAL MERISTEM PROTEIN
1ut4_B3e-345821116164NO APICAL MERISTEM PROTEIN
1ut7_A3e-345821116164NO APICAL MERISTEM PROTEIN
1ut7_B3e-345821116164NO APICAL MERISTEM PROTEIN
3swm_A4e-345821119167NAC domain-containing protein 19
3swm_B4e-345821119167NAC domain-containing protein 19
3swm_C4e-345821119167NAC domain-containing protein 19
3swm_D4e-345821119167NAC domain-containing protein 19
3swp_A4e-345821119167NAC domain-containing protein 19
3swp_B4e-345821119167NAC domain-containing protein 19
3swp_C4e-345821119167NAC domain-containing protein 19
3swp_D4e-345821119167NAC domain-containing protein 19
4dul_A3e-345821116164NAC domain-containing protein 19
4dul_B3e-345821116164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067305.10.0NAC domain-containing protein 2-like
RefseqXP_027122336.10.0NAC domain-containing protein 2-like
TrEMBLA0A068V4190.0A0A068V419_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-40NAC domain containing protein 47