PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04900
Common NameGSCOC_T00028563001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 152aa    MW: 16496.4 Da    PI: 4.3905
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04900genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS73.63.7e-2320149247374
         GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee...aGFkpvplsekaakqaklll 341
                  ++ s+ +l +f+ea++yysalfdsl a +++eseer++vE++ll+rei+nv+a  g +r  + + +++W++  ++   +  k + l  + + +   l 
  Cc01_g04900  20 NYYSAIYLGKFVEAIHYYSALFDSLGACYGEESEERQVVEQQLLSREIRNVLAVGGPSRSSDVK-FNNWSNLTGAsvsSPIKGAGLPCNGTFSTCFLE 116
                  5668889***************************************************888776.******999822244555566666666666666 PP

         GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++s+g +  e++g+l lgW+d  L+++S Wr
  Cc01_g04900 117 GSMESEGEMGVEDNGTLKLGWRDLCLLTASEWR 149
                  6666***999**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.4681126IPR005202Transcription factor GRAS
PfamPF035141.3E-2020149IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MINLSLPANS DICGDRGKYN YYSAIYLGKF VEAIHYYSAL FDSLGACYGE ESEERQVVEQ  60
QLLSREIRNV LAVGGPSRSS DVKFNNWSNL TGASVSSPIK GAGLPCNGTF STCFLEGSME  120
SEGEMGVEDN GTLKLGWRDL CLLTASEWRP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-4622150255380Protein SCARECROW
5b3h_A7e-4622150254379Protein SCARECROW
5b3h_D7e-4622150254379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089628.12e-52protein SCARECROW-like
SwissprotQ2Z2E92e-49SCR_IPONI; Protein SCARECROW
TrEMBLA0A068ULW91e-107A0A068ULW9_COFCA; Uncharacterized protein
STRINGPOPTR_0016s15060.17e-48(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-33GRAS family protein