PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g05000
Common NameGSCOC_T00028577001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 104aa    MW: 11470.4 Da    PI: 10.8748
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g05000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82e-272680155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 kpr+rWt  LH++Fv+av++LGG+ +AtPk+i+  m+++ ++ +h+kSHLQkYRl
  Cc01_g05000 26 KPRIRWTAGLHNCFVKAVDRLGGPFEATPKEIMMQMDIPEVATSHIKSHLQKYRL 80
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-242481IPR009057Homeodomain-like
SuperFamilySSF466892.33E-132482IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-222681IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MAAKGNDTKK LHTSDRQLQV AENTRKPRIR WTAGLHNCFV KAVDRLGGPF EATPKEIMMQ  60
MDIPEVATSH IKSHLQKYRL RMGCNIGTAA DSTVARKGKI PAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122640.16e-67myb family transcription factor PHL8-like
SwissprotF4I2741e-15PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A068ULX71e-71A0A068ULX7_COFCA; Uncharacterized protein
STRINGXP_009765181.14e-20(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120621623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.17e-21G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]