PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g05710
Common NameGSCOC_T00027385001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 144aa    MW: 16624 Da    PI: 5.1602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g05710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.5e-1335122298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  fkv    ++  +g +++p +f++++ ++   ++ + l+ +sg sW ++l   +   +++l kGWk+Fv+   ++e  f+vFk++g s+f   v +f+
  Cc01_g05710  35 FKVV--LSSADQG-IRMPTTFMRDYRES--LEQVVLLKVSSGASWPIEL--IQIEFGTWLDKGWKDFVEYYSIRECHFLVFKYSGGSQF--QVIIFN 122
                  5655..4444444.899********755..556799999**********..77777799*************************99999..777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-2029124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-2030124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.87131124IPR003340B3 DNA binding domain
CDDcd100176.18E-1333122No hitNo description
PfamPF023622.0E-1034121IPR003340B3 DNA binding domain
SMARTSM010192.2E-934124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSSFVSQTIF LYKEVNQFLS PYLPVLCSLP NIHFFKVVLS SADQGIRMPT TFMRDYRESL  60
EQVVLLKVSS GASWPIELIQ IEFGTWLDKG WKDFVEYYSI RECHFLVFKY SGGSQFQVII  120
FNPSASEIEY PLEAPEDHSK HDH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077117.16e-63B3 domain-containing transcription factor VRN1-like
RefseqXP_027178166.18e-63B3 domain-containing transcription factor VRN1-like
TrEMBLA0A068ULH91e-101A0A068ULH9_COFCA; Uncharacterized protein
STRINGXP_010041490.18e-31(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-22B3 family protein