PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g06500
Common NameGSCOC_T00039821001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 153aa    MW: 17174.8 Da    PI: 9.0601
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g06500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-161190186
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86
                 ffkvl+p   + s+ l++p  f +++++  +e     l+ +sg++W+vk+  ++ +++y++t+GW +Fvk++gLk g+f+vF l+ g
  Cc01_g06500 11 FFKVLVP--GFYSK-LSMPPLFWKTFEHLLAE--SALLQIKSGETWSVKI--ERIGEQYFFTDGWPKFVKDHGLKMGEFLVFWLVlG 90
                 6677733..44444.88999999888655344..58888899********..******************************97733 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-19699IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0568106IPR003340B3 DNA binding domain
CDDcd100172.19E-169100No hitNo description
SuperFamilySSF1019362.16E-209108IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-141192IPR003340B3 DNA binding domain
SMARTSM010195.7E-1111101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MTSKAKASPS FFKVLVPGFY SKLSMPPLFW KTFEHLLAES ALLQIKSGET WSVKIERIGE  60
QYFFTDGWPK FVKDHGLKMG EFLVFWLVLG KNNSTTIFEV AMYGTTGCDK DLNPSAPIHD  120
PRHFLPQLVD QPNPEINRNP LTQPSKSAVQ GN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078058.11e-109B3 domain-containing protein REM5-like
TrEMBLA0A068U4A41e-108A0A068U4A4_COFCA; Uncharacterized protein
TrEMBLA0A068UN271e-109A0A068UN27_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-13B3 family protein