PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g07860

Common Name

GSCOC_T00015461001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

YABBY

Protein Properties

Length: 187aa MW: 20809.5 Da PI: 8.6964

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g07860	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	229.8	6.9e-71	2	158	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +++ +se+vCyv+CnfCntilavsvP +s+f +vtvrCGhC++llsvn+ q+l++++ ++ k+++ + ++++ s+s+ ++ + Cc01_g07860 2 SMDITSERVCYVHCNFCNTILAVSVPCSSMFAIVTVRCGHCANLLSVNVGALPQTLPTQDL-QKLQKQQIN---------NEDATKESGSSSKCNKFT 89 67789***************************************************993.332222222.........222222233333333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl Cc01_g07860 90 P-FDSAEHDQPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 158 3.3567788899999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.2E-74	6	158	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-8	99	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.4E-5	106	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSMDITSERV CYVHCNFCNT ILAVSVPCSS MFAIVTVRCG HCANLLSVNV GALPQTLPTQ 60 DLQKLQKQQI NNEDATKESG SSSKCNKFTP FDSAEHDQPR ITPIRPPEKR QRVPSAYNRF 120 IKEEIQRIKA SNPEISHREA FSTAAKNWAH FPHIHFGLKV DGNKQANKLD HPDAGDQGAQ 180 KSRGFY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667757	8e-58	KJ667757.1 Solanum virginianum FAS protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105194.1	1e-140	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	5e-78	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A068V4S5	1e-138	A0A068V4S5_COFCA; Uncharacterized protein
STRING	VIT_06s0009g00880.t01	1e-104	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-80	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]