PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g08720

Common Name

GSCOC_T00023906001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 338aa MW: 35873.3 Da PI: 8.8047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g08720	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	30.3	1.2e-09	292	327	93	128
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ +g+k+t vf++grapkg++t+W+mh y + Cc01_g08720 292 IKSGSTIIGTKRTSVFHNGRAPKGKRTEWIMHKYCM 327 5558889***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.720	6.7E-77	9	260	IPR016040	NAD(P)-binding domain
CDD	cd05326	1.33E-114	13	258	No hit	No description
SuperFamily	SSF51735	9.34E-74	15	260	IPR016040	NAD(P)-binding domain
PRINTS	PR00081	9.6E-36	18	35	IPR002347	Short-chain dehydrogenase/reductase SDR
Pfam	PF13561	6.9E-67	23	258	No hit	No description
PRINTS	PR00080	1.9E-10	90	101	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.6E-36	90	101	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.6E-36	139	155	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	1.9E-10	145	153	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00080	1.9E-10	165	184	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.6E-36	165	184	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.6E-36	186	203	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	9.6E-36	221	241	IPR002347	Short-chain dehydrogenase/reductase SDR
SuperFamily	SSF101941	2.35E-9	291	332	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MANMAIASNI MKRLQGKVAL ITGGASGIGE STARLFVKHG AKVVIADIQD DLAKKVCQDL 60 DPSSASHVHC DTTQESDIEN AVNTAVSKYG KLDIMFNNAG IAGSGTSNIL DDKKSGFERV 120 ISVNLVGVFL GAKHAARVMI PNRCGSIINT ASVCSTIVGA APHAYVSSKH AVVGLTRNTA 180 VDLGRYGIRV NCLSPYFVPT PMAVDFIERI NGGVSKVYTY LDGAVLKADD VADAALYLAS 240 DDSKYVSGHN LVVDGGYSIV NSAMCSTLMI SGNLHVAVYS RFVCHEECGL IIKSGSTIIG 300 TKRTSVFHNG RAPKGKRTEW IMHKYCMSGK SQVKWCF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2bgk_A	3e-75	1	268	1	273	RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE
2bgk_B	3e-75	1	268	1	273	RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE
2bgl_A	3e-75	1	268	1	273	RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE
2bgm_A	3e-75	1	268	1	273	RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE
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Functional Description ? help Back to Top
Source	Description
UniProt	Oxidoreductase involved in lignan biosynthesis. Catalyzes the stereospecific conversion of (-)-secoisolariciresinol to (-)-matairesinol via a lactol intermediate. {ECO:0000269\|PubMed:11278426}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027125289.1	0.0	secoisolariciresinol dehydrogenase-like
Swissprot	Q94KL7	2e-99	SILD_FORIN; Secoisolariciresinol dehydrogenase (Fragment)
TrEMBL	A0A068UF10	0.0	A0A068UF10_COFCA; Uncharacterized protein
STRING	EMJ07569	1e-128	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44290.1	1e-14	NAC domain containing protein 60

Publications ? help Back to Top
Xia ZQ,Costa MA,Pelissier HC,Davin LB,Lewis NG Secoisolariciresinol dehydrogenase purification, cloning, and functional expression. Implications for human health protection. J. Biol. Chem., 2001. 276(16): p. 12614-23 [PMID:11278426]