PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g09080
Common NameGSCOC_T00023950001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 170aa    MW: 18976 Da    PI: 4.5322
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g09080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB422.2e-1332124794
        NF-YB   7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  +lP + v r++k  l    a++ i+  ++a +   e    fi ++t+ a+d c++ +r+ in++d+l al ++ f ++v+pl++ l+++r+ +
  Cc01_g09080  32 ELPKTIVRRLVKDKLSqlsAESEITvfREALQAFSESGRIFIHYLTATANDICKESNRQIINAEDVLKALEEIDFPEFVQPLRASLEEFRQRN 124
                  57888888999876541115555543379999999*******************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-3032164IPR009072Histone-fold
PfamPF008083.4E-932101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.67E-2333143IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAEKEKEKEK EKAKENGEVT TVTESPAGEL EELPKTIVRR LVKDKLSQLS AESEITVFRE  60
ALQAFSESGR IFIHYLTATA NDICKESNRQ IINAEDVLKA LEEIDFPEFV QPLRASLEEF  120
RQRNAGKRSG SSKAKEADRK GKRKEPSTAE VEDEQDATKS DESEDGADD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A9e-153314418124DNA polymerase epsilon subunit D
5y27_A9e-153314418124DNA polymerase epsilon subunit D
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027181522.11e-111DNA polymerase epsilon subunit 3
TrEMBLA0A068UGY21e-116A0A068UGY2_COFCA; Uncharacterized protein
STRINGMigut.D02442.1.p1e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.14e-37nuclear factor Y, subunit B11