PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g11290
Common NameGSCOC_T00024254001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 267aa    MW: 29966 Da    PI: 9.8772
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g11290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC34.44.7e-111722531899
        NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlr.swlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  + ++P+ ri+ki+k  +   +++ ea  l  ka e f lel  r ++  a   +++ +    +a++v++ + fdfl di+p+ 
  Cc01_g11290 172 QCKFPMNRIQKIMKDHDASARLAQEAIFLANKASEKF-LELYCReAYACAFLDHKKQVSYDHLASVVSKRKRFDFLSDIIPQR 253
                  779*********************************9.5777773788888999999***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.7E-12174237IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.64E-14175251IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-20175252IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVGKRSISNG TRSKKLSKPE NPSAPKRKNR DEEEEKEEQE VLILESSSSK PERGKKVVTK  60
KAKKGAKEDS DDEDIRLLFE EKVASQIAAK EWGKIGKSGL MKNKKSGGAG SSSTPKEVEK  120
KKSQGKKKAV AEEEEREQES SGKKEMKNSK KKKNMVAVEE GDDENEREEG PQCKFPMNRI  180
QKIMKDHDAS ARLAQEAIFL ANKASEKFLE LYCREAYACA FLDHKKQVSY DHLASVVSKR  240
KRFDFLSDII PQRVKAEDAL AEVSDK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182089.10.0ABC transporter F family member 4
TrEMBLA0A068UG110.0A0A068UG11_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-26nuclear factor Y, subunit C10