PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g11320

Common Name

GSCOC_T00024259001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 346aa MW: 38950.1 Da PI: 8.5261

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g11320	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.2	1.4e-48	12	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppG+rF P+deel+v+yL++kv++++l++ v+ e+++y+++PwdLpkk+ +e+ewyfFs+rd+ky++g r+nr+++sgyWkatg+dk++ls +g+ Cc01_g11320 12 PPGVRFYPSDEELIVYYLHNKVNSRPLPA-AVVGEIELYSYNPWDLPKKALFGEEEWYFFSPRDRKYPNGARPNRTAASGYWKATGTDKPILSCSGAR 108 9**************************.89***********8888899**************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy g+ p+g+ktdW+m eyrl Cc01_g11320 109 IGVKKALVFYIGKPPNGVKTDWIMIEYRL 137 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-60	7	164	IPR003441	NAC domain
PROSITE profile	PS51005	56.398	11	164	IPR003441	NAC domain
Pfam	PF02365	1.5E-24	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
METQPISSFQ FPPGVRFYPS DEELIVYYLH NKVNSRPLPA AVVGEIELYS YNPWDLPKKA 60 LFGEEEWYFF SPRDRKYPNG ARPNRTAASG YWKATGTDKP ILSCSGARIG VKKALVFYIG 120 KPPNGVKTDW IMIEYRLPDT HKRPSRSTGS MRLDDWVLCR IRQKGNMSKN SWEVPHSPIK 180 VTEDTPNLKE LHSAYAAKNA LDICSSYFLS KDCHLLAKLL ATQDLPRFET NTRATSCSSN 240 ISQNCKTVYE HGTIEENQVT NSFFPSSLNQ QGKPIEEIGY GNIPPSEKAM TNLNKNEFFL 300 AGNVNGASFY NQQQSHGDMF KLNLSSAMMT LQELDVSAFA AKFLP*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

METQPISSFQ FPPGVRFYPS DEELIVYYLH NKVNSRPLPA AVVGEIELYS YNPWDLPKKA  60
LFGEEEWYFF SPRDRKYPNG ARPNRTAASG YWKATGTDKP ILSCSGARIG VKKALVFYIG  120
KPPNGVKTDW IMIEYRLPDT HKRPSRSTGS MRLDDWVLCR IRQKGNMSKN SWEVPHSPIK  180
VTEDTPNLKE LHSAYAAKNA LDICSSYFLS KDCHLLAKLL ATQDLPRFET NTRATSCSSN  240
ISQNCKTVYE HGTIEENQVT NSFFPSSLNQ QGKPIEEIGY GNIPPSEKAM TNLNKNEFFL  300
AGNVNGASFY NQQQSHGDMF KLNLSSAMMT LQELDVSAFA AKFLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-71	2	164	8	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-71	2	164	8	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-71	2	164	8	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-71	2	164	8	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-71	2	164	11	168	NAC domain-containing protein 19
3swm_B	2e-71	2	164	11	168	NAC domain-containing protein 19
3swm_C	2e-71	2	164	11	168	NAC domain-containing protein 19
3swm_D	2e-71	2	164	11	168	NAC domain-containing protein 19
3swp_A	2e-71	2	164	11	168	NAC domain-containing protein 19
3swp_B	2e-71	2	164	11	168	NAC domain-containing protein 19
3swp_C	2e-71	2	164	11	168	NAC domain-containing protein 19
3swp_D	2e-71	2	164	11	168	NAC domain-containing protein 19
4dul_A	1e-71	2	164	8	165	NAC domain-containing protein 19
4dul_B	1e-71	2	164	8	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108046.1	0.0	NAC domain-containing protein 102-like
Swissprot	K4BNG7	3e-75	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A068UFT8	0.0	A0A068UFT8_COFCA; Uncharacterized protein
STRING	VIT_06s0004g03080.t01	1e-111	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-75	NAC domain containing protein 25

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]