PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g11610

Common Name

GSCOC_T00028065001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 207aa MW: 22371.3 Da PI: 7.2709

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g11610	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.6	3.6e-42	40	139	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+la+++ Cc01_g11610 40 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGSAGAICQLQKQVNDLQAQLAKTQ 137 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Cc01_g11610 138 AE 139 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.105	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-42	40	137	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGYSDTTTAT TITSKSSRSV SPSSPSSPPT PPPPAVVVSP CAACKILRRR CAEKCVLAPY 60 FPPNDPIKFT TAHRVFGASN IIKFLQELPE SQRADAVSSM VYEANARLRD PVYGSAGAIC 120 QLQKQVNDLQ AQLAKTQAEL VNMQCQQANL MALICMEMAQ SPQASSPQQQ SFDNNFINSS 180 SQLAAFQANL NLLDDSHPWD HPALWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-42	39	147	10	118	LOB family transfactor Ramosa2.1
5ly0_B	9e-42	39	147	10	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108409.1	1e-151	LOB domain-containing protein 1-like
Swissprot	Q9SK08	2e-69	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A068UL04	1e-150	A0A068UL04_COFCA; Uncharacterized protein
STRING	XP_009610820.1	2e-90	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-64	LOB domain-containing protein 1