PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g11960
Common NameGSCOC_T00028115001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 216aa    MW: 24872.3 Da    PI: 9.9316
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g11960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-19666257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+++t+e l +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  Cc01_g11960  6 STRWCPTPEHLMILEEMYRGgIRTPNASQIQKITAHLsfygKIEGKNVFYWFQNHKARERQ 66
                 68*****************99**************************************97 PP
2Wus_type_Homeobox116.99.6e-38567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+Ptpe ++iLee+y+ G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk
        Cc01_g11960  5 NSTRWCPTPEHLMILEEMYRGGIRTPNASQIQKITAHLSFYGKIEGKNVFYWFQNHKARERQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.734267IPR001356Homeobox domain
SMARTSM003899.1E-4471IPR001356Homeobox domain
CDDcd000860.00227767No hitNo description
PfamPF000465.5E-17766IPR001356Homeobox domain
SuperFamilySSF466893.81E-10767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-6866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSPSNSTRWC PTPEHLMILE EMYRGGIRTP NASQIQKITA HLSFYGKIEG KNVFYWFQNH  60
KARERQKLRR KLSKQLYQQQ LLQEQLCLHR RHNQENKFLS SNESPPPALH QLSLGKSADY  120
LHPGGVGSAA AHMTSCTWKR DPPNMYELQN TSMMRSYGDD WTMMMLKMRD AGPTHYPSCC  180
RSNRPLKTLE LFPITTQNVK DHQATTSNPS LNSYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107632.11e-144WUSCHEL-related homeobox 3-like
TrEMBLA0A068UL401e-161A0A068UL40_COFCA; Uncharacterized protein
STRINGXP_010259966.13e-60(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.17e-36WOX family protein