PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g12280
Common NameGSCOC_T00028159001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 218aa    MW: 24902.3 Da    PI: 10.037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g12280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv +v+ +G ++W+ I++  g++Rt+k+c++rw +yl
      Cc01_g12280  8 KGPWTEQEDVQLVLCVNVYGDRRWDFISKVSGLKRTGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding53.84.3e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
      Cc01_g12280  61 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.426355IPR017930Myb domain
SuperFamilySSF466892.23E-296102IPR009057Homeodomain-like
SMARTSM007171.2E-14757IPR001005SANT/Myb domain
PfamPF002491.3E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-19962IPR009057Homeodomain-like
CDDcd001672.28E-91055No hitNo description
PROSITE profilePS5129426.46456110IPR017930Myb domain
SMARTSM007171.8E-1660108IPR001005SANT/Myb domain
PfamPF002496.2E-1561105IPR001005SANT/Myb domain
CDDcd001671.24E-1063106No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2463109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVQEEIRKGP WTEQEDVQLV LCVNVYGDRR WDFISKVSGL KRTGKSCRLR WVNYLHPGLK  60
RGKMTPHEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKKAAISP  120
SSSSSSSSPS FSNCSSSISN GNSPSMESGP ITETKERSFY DTGGLEMLTA KGNKTGQAEE  180
ERLQKVYSMD EIWKDIEFSD IKQWLLLCGI IALSRCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2851101105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108891.11e-146transcription factor MYB59-like
SwissprotQ9LX825e-74MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A068UKJ21e-159A0A068UKJ2_COFCA; Uncharacterized protein
STRINGVIT_06s0004g04140.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-73myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]