PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g13040
Common NameGSCOC_T00028263001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 699aa    MW: 77143 Da    PI: 8.6954
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g13040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07597646147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Cc01_g13040 597 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.53E-8397486IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.2E-4399472No hitNo description
PROSITE profilePS5005310.049402472IPR000626Ubiquitin domain
CDDcd017691.24E-4405472No hitNo description
PROSITE profilePS5129415.285592651IPR017930Myb domain
SMARTSM007171.2E-7596649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10597647IPR009057Homeodomain-like
SuperFamilySSF466891.26E-15598679IPR009057Homeodomain-like
CDDcd116605.29E-17598648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP RAARSARRRG INRRITDDSQ MCAFDLLATL AGKLLLEGES  60
SPSSTDMGSS GKDQYEASKS LAKEGMLEEN KHVSNFSNQD CSDRSFIVSE LVLQAPSLNN  120
CPKELAHTQN DACSGPTSAI TTSECSEKVG SAERLLSDQS NFQHGKADIE LFGCRVSPGC  180
KLDGEKKRQI KVEPNDLKLS ICARDDICNS ESPIAWDRKP SCLVSSDESV KSLSRDHIPS  240
GSLPHNRENV NLVTRDDDEN SSGCTQPSTV NNAFRPSSHI GDRRIRKLLA SKYWKVTPNL  300
KDGEHFKTVM SSDADMKYVH HDGKNGFKRQ RSQRDFPFKK RKLYHCSSLS NLDGDICTDE  360
MYNSPGKFSN RDACASMLPK VTGPSISGAS EHAAFKSKDS QVKLKIKSFR VPEFFIEIPE  420
TATVGSLKKT VMEAVTAILS GELRVGVLLQ GKKIRDDNKT LLQTGISHDN KLDALGFTLE  480
PNLSQAPPPV SLEDHPFLLS CDSPQPLSRY PPTPSTTANA ALLRGTSDAS PDPPGTNLSN  540
LVESDHDSAP SPPEMSLEKS TVDSRALVAV PAMNVEALSV VPMRKSKRSE AAQRRIRRPF  600
SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LTAHAYWSQQ QVKPQFKQQS EACRLLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-555846964112Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281287DRRIRKL
2327342KRQRSQRDFPFKKRKL
3332341QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027088551.10.0telomere repeat-binding protein 1-like
TrEMBLA0A068UL860.0A0A068UL86_COFCA; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-148TRF-like 2