PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g14030
Common NameGSCOC_T00028389001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 514aa    MW: 56699.4 Da    PI: 7.5994
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g14030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-16154200148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd  l ++vk +G + W+ Ia++m  gR +kqc++rw+++l
      Cc01_g14030 154 KGQWTEEEDNTLRKLVKHFGVKKWAQIAEKMV-GRAGKQCRERWHNHL 200
                      799*****************************.*************97 PP
2Myb_DNA-binding54.33.1e-17206248145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE++llv+a+ + G++ W+ I ++++ gRt++++k++w+
      Cc01_g14030 206 KDAWSQEEEKLLVEAHIEVGNR-WAEIGKRIP-GRTENSIKNHWN 248
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.572149204IPR017930Myb domain
SuperFamilySSF466894.49E-29152247IPR009057Homeodomain-like
SMARTSM007175.7E-16153202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-26155208IPR009057Homeodomain-like
PfamPF139212.2E-19157217No hitNo description
CDDcd001672.89E-15157200No hitNo description
SMARTSM007173.0E-16205253IPR001005SANT/Myb domain
PROSITE profilePS5129419.458205255IPR017930Myb domain
CDDcd001678.74E-13208251No hitNo description
Gene3DG3DSA:1.10.10.603.2E-19209253IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MEGGGGLEGS FPYGNYCQGD HHLRLPLLKP RPPLTAIDRF LCGQRHFSQL EILANFKSKA  60
TLVPVNSDFV SSSSGGAIHG HAGGGGLLSW PITLPPSRDA SSSVNGVLCN KESTPNLSPE  120
MNPNVGLEKE EDLPRVPRGT GRRGKGDPSV ALIKGQWTEE EDNTLRKLVK HFGVKKWAQI  180
AEKMVGRAGK QCRERWHNHL RPDIKKDAWS QEEEKLLVEA HIEVGNRWAE IGKRIPGRTE  240
NSIKNHWNAT KRRQNSKKKF KKPEGVHNGR NQSTILQEYI KSTCFNDDSL INISTGPSST  300
TMIPVNSAAT QITPFNSVIS EDPTSAHFNM LYPELSQSAS GDSSSYLAQH SYDDEMNFMQ  360
NLFGSYNLNV STSCKNDKGK APLDIGINQK DKCSASFNSS GYNSTNSNNQ DFGGNLDYGF  420
FPSFAEPSLP TRTYVGDQES NQPIRMYSDA YLSHILDGGN VLCALPEVYP SNMNMEKMMI  480
DQASPSVGKE VDLIEMISNS QFARKNATNN FVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-421522542104C-Myb DNA-Binding Domain
1msf_C1e-421522542104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112712.10.0transcription factor MYB64-like
TrEMBLA0A068UL680.0A0A068UL68_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-60myb domain protein 119