PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g14590
Common NameGSCOC_T00028465001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 373aa    MW: 41682.4 Da    PI: 8.99
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g14590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.46.7e-3366119255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Cc01_g14590  66 PRLRWTPDLHRCFVQAVEKLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 119
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9562122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-3162120IPR009057Homeodomain-like
SuperFamilySSF466891.51E-1564120IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-2466120IPR006447Myb domain, plants
PfamPF002491.4E-967118IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEEKGNFSDG LPEVNSSDHG MKDGGGSDEP KTSGSSSSNS MAEESTGKKL SSSATGVRQY  60
VRSKMPRLRW TPDLHRCFVQ AVEKLGGQER ATPKLVLQLM NVKGLSIAHV KSHLQMYRSR  120
NIDDHGQVIN ERGYPFRSMD HFLRNGWQFA TLDRGIRSSF SYSYSDDNWT SNMTWRAMPG  180
TVDDTNIKRG TVFHNTSLGR IYGGIGANAI NGSLFGTQER RKSYNYMEDF TWLPDTKINH  240
KGIWPSRGET NSELTQVYKE KRVESIVNAA SPETKCSGTK TEKANTAKRK APDNGVDLNL  300
SLSMNLRQGE SKRTHNWDEE EKDSTLSLSL FSASNAEKCS IDLNMSSTFN RLNEDTQKFK  360
DPMLASTLDL TI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1867119355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1867119355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1867119355Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1867119355Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174711.10.0uncharacterized protein LOC113774362
TrEMBLA0A068ULT30.0A0A068ULT3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43822141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-37G2-like family protein