PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g15120

Common Name

GSCOC_T00016603001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 219aa MW: 23084.3 Da PI: 8.2164

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g15120	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.1	1.3e-42	13	113	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ Cc01_g15120 13 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELHAVR 110 7***********************************************************************************************99 PP DUF260 99 eel 101 +e+ Cc01_g15120 111 NEI 113 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.86	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-42	13	110	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLGPPGTLNT ITPCAACKLL RRRCAEECPF SPYFSPHEPQ KFAAVHKVFG ASNVSKMLME 60 VPENQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ SLQAELHAVR NEILRYKYRE 120 AANNIIASTH AALVSSGNHV SVAMMPQAPA TPTPTPAPPP STPTPAPAPP PPPPAQPSAS 180 LVVVSTTSSA PSAPSLYTPP SSTASFNTIT NNNIPFFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-46	13	123	11	121	LOB family transfactor Ramosa2.1
5ly0_B	6e-46	13	123	11	121	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027091064.1	1e-154	LOB domain-containing protein 15-like isoform X1
Refseq	XP_027091071.1	1e-153	LOB domain-containing protein 15-like isoform X2
Swissprot	Q9AT61	1e-71	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A068U7A7	1e-155	A0A068U7A7_COFCA; Uncharacterized protein
STRING	Migut.N00746.1.p	1e-91	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-71	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]