PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g15290
Common NameGSCOC_T00016581001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 488aa    MW: 54002 Da    PI: 6.5358
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g15290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45e-11438485347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rW+t E+e l  +v+++G g+Wk I +        Rt+ ++k++w+++
      Cc01_g15290 438 RWSTSEEETLRIGVEKYGRGNWKVILNAYRdvfDERTEVDLKDKWRNL 485
                      9********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-11429486IPR009057Homeodomain-like
PROSITE profilePS5129414.184431487IPR017930Myb domain
SuperFamilySSF466893.43E-14433486IPR009057Homeodomain-like
SMARTSM007173.5E-4435487IPR001005SANT/Myb domain
CDDcd116601.99E-18437487No hitNo description
PfamPF002498.9E-9438485IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDVDIDVDIA RWILEFLVRQ PLDDRIVSSL ISILPPTNEN SGLKKSLLLR RIESEISAGS  60
VSEKILDILE QIEELDFQDK IKQHSDLIKA AYCSVAVACT AKFLNDKDVD SKFRYFDAVR  120
RIWRGRVCKM ENAEKVGLIS EELKSWKDEL EAAVWDESIW DSVLQKSKGL DAVGAVRLYV  180
REEKDDIGPS FLELVAEALR ADDKLKGILG FKGTHGGAIQ SSGPRDANTG GCFSIHVEVQ  240
RANVVSGRKH VASKRIRGAP SGMSRGAKII DGDTSGADIS GKTFDLPSTP EVHEVQEALK  300
SSSLDLKAVV KDPLPDALNI ADTVVSSIER KDAGKQPVEE NHVGANPSIA ESSGAVQANE  360
GTLGNHCSEH QKDAPRQSLM ARSSTARTFE WDDSVDALAG DSPNPGNGVQ LPSPKRRVVS  420
PLKKYEINNM KKRRKFKRWS TSEEETLRIG VEKYGRGNWK VILNAYRDVF DERTEVDLKD  480
KWRNLTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414434KRRVVSPLKKYEINNMKKRRK
2430434KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091281.10.0uncharacterized protein LOC113712180 isoform X1
RefseqXP_027112453.10.0uncharacterized protein LOC113731391 isoform X1
TrEMBLA0A068U6V90.0A0A068U6V9_COFCA; Uncharacterized protein
STRINGXP_009587848.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-14TRF-like 5