PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g15440
Common NameGSCOC_T00016560001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 284aa    MW: 32463.5 Da    PI: 10.006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g15440genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-19138227198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+v +  +l lp +f+e+h    +++++++lede+g ++e  +i ++++    l++GW+ F+ +++L++gD +vF+l++ ++f  +v ++r
  Cc01_g15440 138 FIKSMVRSHVYSCFWLGLPSSFCEDHLP--KSTVDMVLEDEDGLEFEAVYISKRSG----LSGGWRAFALEHKLDDGDALVFELIEPTRF--KVYIVR 227
                  89************************53..3789****************655555....9***********************987777..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-21131228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-23132228IPR015300DNA-binding pseudobarrel domain
CDDcd100178.32E-26136227No hitNo description
PROSITE profilePS5086312.478138229IPR003340B3 DNA binding domain
PfamPF023622.1E-17138228IPR003340B3 DNA binding domain
SMARTSM010192.1E-23138229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAKDNNANTY EEARKQRVLD NKKRFEDLGI LSISKSLSDV SKSEKKSKRS LSRPKPNDVY  60
MVEPRRSSRA RTQVTSYRDD VDVDLPRMRK RSKWSSSWAS YLARPMEEVR AASYEERSRA  120
RLSAEMLQSN LQLENPSFIK SMVRSHVYSC FWLGLPSSFC EDHLPKSTVD MVLEDEDGLE  180
FEAVYISKRS GLSGGWRAFA LEHKLDDGDA LVFELIEPTR FKVYIVRAVS CSTQEEGGSD  240
AGERPKEKTK QRKKDNTRSK DSIRPEEDAS SKASGRRRSS RLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274281GRRRSSRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112729.10.0putative B3 domain-containing protein At5g58280 isoform X2
SwissprotQ9FHB22e-69Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A068U6T90.0A0A068U6T9_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000531991e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.18e-57B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]