PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g15970

Common Name

GSCOC_T00016497001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 244aa MW: 27293.6 Da PI: 5.5174

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g15970	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.1	2.7e-27	79	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YA++vGF vr+ + ++s+++g++ r++ C+k+g++ +++ + + +r+r + r gCka++ vk+ek+gkw+vt+++++HnH+l Cc01_g15970 79 KFYIDYARKVGFVVRIMQRRRSETDGRTLARRLGCNKQGFSPNNQGSVASGKRPRCSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 167 6**************************************************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-25	79	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSPAELIAYV DLDKEDRNRE EENNSEGKEG EDVVGEGNAE ELDANDVMDV DGNTGQLKDS 60 EVLEPYVGME FESEDAARKF YIDYARKVGF VVRIMQRRRS ETDGRTLARR LGCNKQGFSP 120 NNQGSVASGK RPRCSAREGC KATILVKMEK SGKWVVTRFV KDHNHPLIIS ARGVSNGVDK 180 DKKIEQLTLE LQRQDQLCTA YRNKLLNFLA SVEEQGEHLS SKINGVIENV KKIEAEIQKS 240 SCH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113238.1	1e-180	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A068U715	1e-179	A0A068U715_COFCA; Uncharacterized protein
STRING	XP_006492212.1	6e-98	(Citrus sinensis)
STRING	evm.model.supercontig_8.54	1e-97	(Carica papaya)
STRING	XP_006447971.1	6e-98	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-72	FAR1 family protein